publ.bib

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@article{HausKoeppeWeismantel00,
  author = {Haus, Utz-Uwe and K{\"o}ppe, Matthias and
                  Weismantel, Robert},
  title = {The {I}ntegral {B}asis {M}ethod for Integer
                  Programming},
  year = 2001,
  journal = {Mathematical Methods of Operations Research},
  volume = 53,
  number = 3,
  pages = {353--361},
  doi = {doi:10.1007/s001860100124},
  equivalent-entries = {HausKoeppeWeismantel01a,
                  haus-koeppe-weismantel-2000:ibm-soda-preprint}
}
@article{ibm-theory,
  author = {Haus, Utz-Uwe and K{\"o}ppe, Matthias and
                  Weismantel, Robert},
  title = {A Primal All-Integer Algorithm Based on Irreducible
                  Solutions},
  journal = {Math. Programming, Series B},
  volume = 96,
  number = 2,
  pages = {205--246},
  year = 2003,
  doi = {doi:10.1007/s10107-003-0384-8},
  equivalent-entries = {HausKoeppeWeismantel01b}
}
@incollection{primstab,
  author = {Gentile, Claudio and Haus, Utz-Uwe and K{\"o}ppe,
                  Matthias and Rinaldi, Giovanni and Weismantel,
                  Robert},
  editor = {Martin Gr{\"o}t{\-}schel},
  booktitle = {The Sharpest Cut: The Impact of {M}anfred {P}adberg
                  and His Work},
  title = {On the Way to Perfection: Primal Operations for
                  Stable Sets in Graphs},
  publisher = {MPS/SIAM},
  year = 2004,
  doi = {doi:10.1137/1.9780898718805.ch6}
}
@incollection{primstab-esa:2002,
  author = {Claudio Gentile and Utz-Uwe Haus and Matthias
                  K{\"o}ppe and Giovanni Rinaldi and Robert
                  Weismantel},
  title = {A Primal Approach to the Stable Set Problem},
  booktitle = {Algorithms -- ESA 2002: 10th Annual European
                  Symposium, Rome, Italy, September 17--21, 2002,
                  Proceedings},
  pages = {525--537},
  publisher = {Springer},
  year = 2002,
  editor = {Rolf M{\"o}hring and Rajeev Raman},
  volume = 2461,
  doi = {10.1007/3-540-45749-6_47},
  series = {Lecture Notes in Computer Science}
}
@phdthesis{haus:diss,
  author = {Haus, Utz-Uwe},
  title = {An Augmentation Framework for Integer Programming},
  school = {Otto-von-Guericke Universit{\"a}t Magdeburg},
  year = 2004,
  type = {Dissertation},
  note = {ISBN~3-89959-269-7, Der Andere Verlag, T{\"o}nning}
}
@article{hemmecke-haus:chemnetsI,
  author = {Haus, Utz-Uwe and Raymond Hemmecke},
  title = {Decomposition of reaction networks: the initial
                  phase of the permanganate/oxalic acid reaction},
  journal = {Journal of Mathematical Chemistry},
  year = 2010,
  volume = 48,
  number = 2,
  pages = {305-312},
  doi = {10.1007/s10910-010-9670-x}
}
@article{haus-hemmecke-pokutta:chemnetsII,
  author = {Haus, Utz-Uwe and Hemmecke, Raymond and Pokutta,
                  Sebastian},
  title = {Reconstructing biochemical cluster networks},
  journal = {Journal of Mathematical Chemistry},
  volume = 49,
  number = 10,
  pages = {2441-2456},
  year = 2011,
  doi = {10.1007/s10910-011-9892-6}
}
@article{eisenschmidt-haus:11,
  author = {Elke Eisenschmidt and Utz-Uwe Haus},
  title = {A Polynomial Time Approximation Algorithm for the
                  Two-Commodity Splittable Flow Problem},
  journal = {Mathematical Methods of Operations Research},
  year = 2013,
  volume = 77,
  number = 3,
  pages = {381-391},
  doi = {10.1007/s00186-012-0402-9}
}
@article{haus-pfeuffer:2011,
  author = {Utz-Uwe Haus and Frank Pfeuffer},
  title = {Split Cuts for Robust Mixed-Integer Optimization},
  journal = {Operations Research Letters},
  volume = {40},
  pages = {165-171},
  year = 2012,
  doi = {10.1016/j.orl.2012.01.009}
}
@techreport{adjiashvili-haus-tate:15,
  author = {David Adjiashvili and Utz-Uwe Haus and Adrian Tate},
  title = {Model-Driven Automatic Tiling with Cache
                  Associativity Lattices},
  institution = {arXiv.org},
  year = 2015,
  type = {eprint},
  number = {arXiv:1511.05585~[cs.PF]},
  url = {http://arxiv.org/abs//1511.05585},
  month = {November}
}
@article{haus-michini:16,
  author = {Utz-Uwe Haus and Carla Michini},
  title = {Compact Representations of all Members of an
                  Independence System},
  journal = {Annals of Mathematics and Artificial Intelligence},
  year = 2017,
  volume = 79,
  number = 1,
  pages = {145--162},
  issn = {1573-7470},
  doi = {10.1007/s10472-016-9496-8}
}
@techreport{haus-michini-laumanns:17-arxiv,
  author = {Utz-Uwe Haus and Carla Michini and Marco Laumanns},
  title = {Scenario Aggregation using Binary Decision Diagrams
                  for Stochastic Programs with Endogenous Uncertainty},
  institution = {arxiv.org},
  year = 2017,
  type = {arxiv eprint},
  url = {https://arxiv.org/abs/1701.04055},
  number = {arXiv:1701.04055}
}
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@article{boehlke-haus-schulze:06,
  author = {B{\"o}hlke, Thomas and Haus, Utz-Uwe and Schulze,
                  Volker},
  title = {Crystallographic Texture Approximation by Quadratic
                  Programming},
  journal = {Acta Materialia},
  year = 2006,
  volume = 54,
  number = 5,
  pages = {1359-1368},
  month = {March},
  doi = {10.1016/j.actamat.2005.11.009}
}
@inproceedings{gangadwala-kienle-haus-michaels-seidelmorgenstern-weismantel:escape16,
  author = {Haus, Utz-Uwe and Gangadwala, Jignesh and Kienle,
                  Achim and Michaels, Dennis and Seidel-Morgenstern,
                  Andreas and Weismantel, Robert},
  title = {Global bounds on optimal solutions in chemical
                  process design},
  booktitle = {16th European Symposium on Computer-Aided Process
                  Engineering and 9th International Symposium on
                  Process Systems Engineering},
  editors = {Wolfgang Marquardt and Costas Pantelides},
  volume = 21,
  pages = {155--160},
  year = 2006,
  doi = {doi:10.1016/j.compchemeng.2007.04.015},
  series = {Computer-aided chemical engineering},
  address = {Garmisch-Partenkirchen, July~9--July~13 2006},
  publisher = {Elsevier}
}
@article{gkhmw:dmb1,
  author = {Gangadwala, Jignesh and Kienle, Achim and Haus,
                  Utz-Uwe and Michaels, Dennis and Weismantel, Robert},
  title = {Global {B}ounds on {O}ptimal {S}olutions for the
                  {P}roduction of 2,3-{D}imethylbutene-1},
  journal = {Industrial \& Engineering Chemistry Research},
  year = 2006,
  volume = 45,
  number = 7,
  pages = {2261--2271},
  month = {February},
  doi = {10.1021/ie050584j}
}
@article{hmsw:TMB,
  author = {Haus, Utz-Uwe and Michaels, Dennis and
                  Seidel-Morgenstern, Andreas and Weismantel, Robert},
  title = {A Method to evaluate the feasibility of {TMB}
                  chromatography for reduced efficiency and purity
                  requirements based on discrete optimization},
  journal = {Computers \& Chemical Engineering},
  year = {2007},
  volume = {31},
  number = {11},
  pages = {1525-1534},
  month = {November},
  doi = {doi:10.1016/j.compchemeng.2007.01.001}
}
@article{haus-mayer-raisch-weismantel:hts,
  author = {Haus, Utz-Uwe and Mayer, Eckart
                  and Raisch, J{\"org} and Weismantel,
                  Robert},
  title = {Throughput-optimal sequences for cyclically operated
                  plants},
  journal = {Discrete Event Dynamic Systems},
  year = 2008,
  volume = 18,
  number = 3,
  pages = {	355-383},
  doi = {10.1007/s10626-008-0038-3}
}
@inproceedings{haus-michaels-savchenko:engopt2008,
  author = {Utz-Uwe Haus and Dennis Michaels and Anton
                  Savchenko},
  title = {Extended Formulations for {MINLP} Problems by Value
                  Decompositions},
  booktitle = {Proceedings of the EngOpt 2008 conference, June
                  1--5, 2008, Rio de Janeiro, Brazil},
  year = 2008
}
@article{bbfhrw:09,
  author = {Steffen Borchers and Sandro Bosio and Rolf Findeisen
                  and Utz-Uwe Haus and Phillip Rumschinski and Robert
                  Weismantel},
  title = {Graph problems arising from parameter identification
                  of discrete dynamical systems},
  journal = {Mathematical Methods of Operations Research},
  year = 2011,
  volume = 73,
  pages = {381-400},
  doi = {10.1007/s00186-011-0356-3}
}
@inproceedings{chauve-haus-stephen-you:09,
  author = {Cedric Chauve and Utz-Uwe Haus and Tamon Stephen and
                  Vivija P. You},
  title = {Minimal Conflicting Sets for the Consecutive Ones
                  Property in ancestral genome reconstruction},
  booktitle = {Comparative Genomics. Proceedings of International
                  Workshop RECOMB-CG 2009, Budapest, Hungary,
                  September 27-29, 2009},
  pages = {48-58},
  year = 2009,
  volume = 5817,
  series = {Lecture Notes in Bioinformatics},
  publisher = {Springer},
  doi = {10.1007/978-3-642-04744-2}
}
@inproceedings{eisenschmidt-haus-schmidt-saemann:10,
  author = {Eisenschmidt, Elke and Haus, Utz-Uwe and Schmidt,
                  Enrico and Saemann, Julia},
  title = {Monotone and Almost-Monotone {B}oolean Functions:
                  {F}requent Maximally Infrequent Sets},
  booktitle = {Proceedings of the Eleventh International Symposium
                  on Artificial Intelligence and Mathematics},
  year = 2010,
  editor = {J. Franco},
  address = {Ft. Lauderdale},
  month = {January},
  note = {\url{http://gauss.ececs.uc.edu/Workshops/isaim2010/proceedings.html}}
}
@article{eisenschmidt-haus:10,
  author = {Eisenschmidt, Elke and Haus, Utz-Uwe},
  title = {Discovering All Associations in Discrete Data using
                  Frequent Minimally Infrequent Attribute Sets},
  journal = {Discrete Applied Mathematics},
  volume = 160,
  number = 12,
  pages = {1730-1741},
  year = 2012,
  doi = {10.1016/j.dam.2012.03.013}
}
@inproceedings{eisenschmidt-haus:isaim2012,
  author = {Eisenschmidt, Elke and Haus, Utz-Uwe},
  title = {Bi-tone and $k$-tone Decompositions of {B}oolean
                  Functions},
  booktitle = {Proceedings of the Twelfth International Symposium
                  on Artificial Intelligence and Mathematics},
  year = 2012,
  editor = {Robert H. Sloan},
  address = {Ft. Lauderdale},
  month = {January},
  note = {\url{https://ece.uic.edu/bin/view/Isaim2012/AcceptedPapers}}
}
@article{chauve-haus-stephen-you:10,
  author = {Cedric Chauve and Utz-Uwe Haus and Tamon Stephen and
                  Vivija P. You},
  title = {Minimal Conflicting Sets for the Consecutive Ones
                  Property in ancestral genome reconstruction},
  journal = {Journal of Computational Biology},
  year = 2010,
  volume = 17,
  number = 9,
  pages = {1167-1181},
  doi = {10.1089/cmb.2010.0113}
}
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@article{haus-truemper-weismantel:07,
  author = {Haus, Utz-Uwe and Truemper, Klaus and Weismantel,
                  Robert},
  title = {Linear Satisfiability Algorithm for {3CNF} Formulas
                  of Certain Signaling Networks},
  journal = {Journal on Satisfiability, Boolean Modeling and
                  Computations (JSAT)},
  year = 2008,
  volume = 6,
  pages = {13-22},
  month = {September},
  url = {http://jsat.ewi.tudelft.nl/content/volume6/JSAT6_2_Haus.pdf}
}
@article{haus-niermann-truemper-weismantel:09,
  author = {Utz-Uwe Haus and  Kathrin Niermann and Klaus Truemper and
                  Robert Weismantel},
  title = {Logic Integer Programming Models for Signaling
                  Networks},
  journal = {Journal of Computational Biology},
  volume = 16,
  number = 5,
  pages = {725-743},
  month = {May},
  year = 2009,
  doi = {10.1089/cmb.2008.0163},
  annote = {this is hntw:08}
}
@article{klamt-haus-theis:09,
  author = {Steffen Klamt and Utz-Uwe Haus and Fabian Theis},
  title = {Hypergraphs and cellular networks},
  journal = {PLoS Computational Biology},
  year = 2009,
  volume = 5,
  number = 5,
  month = {May},
  pages = {e1000385},
  doi = {10.1371/journal.pcbi.1000385}
}
@incollection{niermann-haus:review:2011,
  author = {Kathrin Ballerstein and Utz-Uwe Haus and Jonathan
                  A. Lindquist and Tilo Beyer and Burkhart Schraven
                  and Robert Weismantel},
  title = {Discrete, Qualitative Models of Interaction
                  Networks},
  booktitle = {Systems Immunology},
  issn = {1945-0524},
  publisher = {Frontiers in Bioscience},
  year = 2013,
  editor = {Wolfgamg Schamel},
  volume = {S5},
  pages = {149-166},
  doi = {10.2741/S363},
  url = {http://www.bioscience.org/2013/v5s/af/363/fulltext.htm}
}
@article{ballerstein-haus-kamp-klamt:2011,
  author = {Kathrin Ballerstein and von Kamp, Axel and Steffen
                  Klamt and Haus, Utz-Uwe},
  title = {Minimal cut sets in a metabolic network are
                  elementary modes in a dual network},
  journal = {Bioinformatics},
  year = 2012,
  volume = 28,
  number = 3,
  pages = {381-387},
  doi = {10.1093/bioinformatics/btr674}
}
@inproceedings{haus-michini:isaim14,
  author = {Haus, Utz-Uwe and Michini, Carla},
  title = {Representations of All Solutions of a {B}oolean
                  Programming Problem},
  booktitle = {Proceedings of the Thirteenth International
                  Symposium on Artificial Intelligence and
                  Mathematics},
  year = 2014,
  editor = {G. T{\'u}ran},
  note = {\url{http://www.cs.uic.edu/pub/Isaim2014/WebPreferences/ISAIM2014_Boolean_Haus_Michini.pdf}}
}
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@article{immu-2,
  author = {Saez-Rodriguez, Julio and Simeoni, Luca and
                  Lindquist, Jonathan and Hemenway, Rebecca and
                  Bommhardt, Ursula and Arndt, Boerge and Haus,
                  Utz-Uwe and Weismantel, Robert and Gilles, Ernst D.
                  and Klamt, Steffen and Schraven, Burkhart},
  title = {An Extensive Logical Model Predicts Key Events in
                  the {T}-cell Receptor Signaling Network},
  journal = {PLoS Computational Biology},
  year = 2007,
  month = {August},
  doi = {10.1371/journal.pcbi.0030163}
}
@article{haus-klamt-stephen:08,
  author = {Haus, Utz-Uwe and Klamt,
                  Steffen and Stephen, Tamon},
  title = {Computing knockout strategies in metabolic networks},
  journal = {Journal of Computational Biology},
  year = 2008,
  volume = 15,
  pages = {259-268},
  doi = {10.1089/cmb.2007.0229},
  annote = {published version of haus-klamt-stephen:06}
}
@article{immu-il2:2011,
  author = {Tilo Beyer and Mandy Busse and Kroum Hristov and
                  Slavyana Gurbiel and Michal Smida and Utz-Uwe Haus
                  and Kathrin Ballerstein and Frank Pfeuffer and
                  Robert Weismantel and Burkhart Schraven and Jonathan
                  Axel Lindquist },
  title = {Integrating signals from the {T}-cell receptor and
                  the Interleukin-2 receptor},
  journal = {{PLoS} Computational Biology},
  year = 2011,
  volume = 7,
  number = 8,
  pages = {e1002121},
  month = {August},
  doi = {10.1371/journal.pcbi.1002121}
}
@article{synprot-learning:12,
  author = {Thilo K{\"a}hne and Angela Kolodziej and Karl-Heinz
                  Smalla and Elke Eisenschmidt and Utz-Uwe Haus and
                  Robert Weismantel and Siegfried Kropf and Wolfram
                  Wetzel and Frank W. Ohl and Wolfgang Tischmeyer and
                  Michael Naumann and Eckart D. Gundelfinger },
  title = {Synaptic proteome changes in mouse brain regions
                  upon auditory discrimination learning},
  journal = {Proteomics},
  volume = 12,
  number = {15-16},
  pages = {2433-2444},
  issn = {1615-9861},
  year = 2012,
  doi = {10.1002/pmic.201100669}
}
@article{synprot-database-paper:11,
  author = {Rainer Pielot and Karl-Heinz Smalla and Anke
                  M{\"u}ller and Peter Landgraf and Anne-Christin
                  Lehmann and Elke Eisenschmidt and Utz-Uwe Haus and
                  Robert Weismantel and Eckart D. Gundelfinger and
                  Daniela C. Dieterich},
  title = {SynProt: {A} database for proteins of
                  detergent-resistant synaptic protein preparations},
  journal = {Frontiers in Synaptic Neuroscience},
  year = 2012,
  volume = 4,
  year = 2012,
  number = 00001,
  issn = {1663-3563},
  doi = {10.3389/fnsyn.2012.00001}
}
@article{haus:13,
  author = {Utz-Uwe Haus},
  title = {Bounding stochastic dependence, joint mixability of
                  matrices, and multidimensional bottleneck assignment
                  problems},
  journal = {Operations Research Letters},
  year = 2015,
  month = {January},
  volume = 43,
  number = 1,
  pages = {74-79},
  doi = {10.1016/j.orl.2014.11.009}
}
@article{dhh-1998,
  author = {Dais, Dimitrios and Haus, Utz-Uwe and Henk, Martin},
  title = {On crepant resolutions of 2-parameter series of {G}orenstein 
		  cyclic quotient singularities},
  journal = {Results in Math.},
  year = 1998,
  volume = {33},
  pages = {208--265}
}
@mastersthesis{haus-1999:diplom-de,
  author = {Haus, Utz-Uwe},
  title = {Gitterpackungen konvexer {K}{\"o}rper},
  school = {Technische Universit{\"a}t Berlin},
  year = 1999,
  type = {Diplomarbeit}
}

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